Suffix tree

Results: 142



#Item
11Computational phylogenetics / Computer programming / Bioinformatics / Software engineering / Suffix tree / Tree alignment / Dynamic programming / BLAST / BurrowsWheeler transform / Tree traversal / Tree / NeedlemanWunsch algorithm

CSE 584A Class 20 Jeremy Buhler April 6, 2016 1

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Source URL: classes.engineering.wustl.edu

Language: English - Date: 2016-04-06 08:04:12
12Suffix tree / String searching algorithm / String / Generalized suffix tree / Trie / NP / Planted motif search

International Journal of Foundations of Computer Science c World Scientific Publishing Company ! A First Approach to Finding Common Motifs With Gaps COSTAS S. ILIOPOULOS∗

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:22
13Arrays / LCP array / Suffix tree / B-tree / Knowledge representation / Suffix array / String searching algorithm / Tree traversal / Tree / Linked list / Maximal pair

CSE 584A Class 11 Jeremy Buhler February 24, 2016 1

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Source URL: classes.engineering.wustl.edu

Language: English - Date: 2016-02-23 18:02:46
14Computational phylogenetics / Suffix tree / Dynamic programming / Tree traversal

CSE 584 Algorithms for Biosequence Comparison Spring Semester 2016 Homework 4 Assigned:

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Source URL: classes.engineering.wustl.edu

Language: English - Date: 2016-04-07 17:18:10
15Arrays / Analysis of algorithms / Suffix array / Suffix tree / String searching algorithm / Time complexity / Trie / FO / Logarithm / Big O notation / Compressed suffix array / Rope

Opportunistic Data Structures with Applications Paolo Ferragina∗ Giovanni Manzini† Abstract

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Source URL: people.unipmn.it

Language: English
16Gene expression / Networks / Bioinformatics / Suffix tree / Binary trees / Tree traversal / Gene regulatory network / R-tree / Rope / Algorithm / Planted motif search / Tree alignment

A highly scalable algorithm for the extraction of cis-regulatory regions Alexandra M. Carvalho∗ INESC-ID Rua Alves Redol, Lisboa, Portugal

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:21
17Bioinformatics / Computational phylogenetics / Nucleic acids / Suffix tree / Evolutionary biology / Molecular biology / MUMmer / Multiple sequence alignment / Sequence alignment / Conserved sequence / Nucleic acid sequence / Homology

WSEAS TRANSACTIONS on BIOLOGY and BIOMEDICINE S.M. Yiu P.Y. Chan T.W. Lam W.K. Sung H.F. Ting P.W.H. Wong Allowing Mismatches in Anchors for Whole Genome Alignment

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Source URL: www.wseas.us

Language: English - Date: 2008-03-13 05:22:34
18Binary trees / Arrays / Knowledge representation / Data types / Theoretical computer science / Suffix tree / Tree / Suffix array / Rope / Lowest common ancestor / AVL tree / B-tree

Theoretical Computer Science – 254 www.elsevier.com/locate/tcs Longest repeats with a block of k don’t cares Maxime Crochemorea, b,1 , Costas S. Iliopoulosb,2 , Manal Mohamedb,∗ , Marie-France Sagotc

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:21
19Formal languages / Pattern matching / String searching algorithm / Regular expression / Intron / String / Suffix tree / Substring / Teiresias algorithm / Pattern language

Genome Informatics 13: 3–A String Pattern Regression Algorithm and Its Application to Pattern Discovery in Long Introns

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Source URL: www.jsbi.org

Language: English - Date: 2002-12-09 05:53:37
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