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#	Item
11	CSE 584A Class 20 Jeremy Buhler April 6, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-04-06 08:04:12 Computational phylogenetics Computer programming Bioinformatics Software engineering Suffix tree Tree alignment Dynamic programming BLAST BurrowsWheeler transform Tree traversal Tree NeedlemanWunsch algorithm
12	International Journal of Foundations of Computer Science c World Scientific Publishing Company ! A First Approach to Finding Common Motifs With Gaps COSTAS S. ILIOPOULOS∗ Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:22 Suffix tree String searching algorithm String Generalized suffix tree Trie NP Planted motif search
13	CSE 584A Class 11 Jeremy Buhler February 24, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-02-23 18:02:46 Arrays LCP array Suffix tree B-tree Knowledge representation Suffix array String searching algorithm Tree traversal Tree Linked list Maximal pair
14	CSE 584 Algorithms for Biosequence Comparison Spring Semester 2016 Homework 4 Assigned: Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-04-07 17:18:10 Computational phylogenetics Suffix tree Dynamic programming Tree traversal
15	Opportunistic Data Structures with Applications Paolo Ferragina∗ Giovanni Manzini† Abstract Add to Reading List Source URL: people.unipmn.it Language: English Arrays Analysis of algorithms Suffix array Suffix tree String searching algorithm Time complexity Trie FO Logarithm Big O notation Compressed suffix array Rope
16	A highly scalable algorithm for the extraction of cis-regulatory regions Alexandra M. Carvalho∗ INESC-ID Rua Alves Redol, Lisboa, Portugal Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:21 Gene expression Networks Bioinformatics Suffix tree Binary trees Tree traversal Gene regulatory network R-tree Rope Algorithm Planted motif search Tree alignment
17	WSEAS TRANSACTIONS on BIOLOGY and BIOMEDICINE S.M. Yiu P.Y. Chan T.W. Lam W.K. Sung H.F. Ting P.W.H. Wong Allowing Mismatches in Anchors for Whole Genome Alignment Add to Reading List Source URL: www.wseas.us Language: English - Date: 2008-03-13 05:22:34 Bioinformatics Computational phylogenetics Nucleic acids Suffix tree Evolutionary biology Molecular biology MUMmer Multiple sequence alignment Sequence alignment Conserved sequence Nucleic acid sequence Homology
18	Theoretical Computer Science – 254 www.elsevier.com/locate/tcs Longest repeats with a block of k don’t cares Maxime Crochemorea, b,1 , Costas S. Iliopoulosb,2 , Manal Mohamedb,∗ , Marie-France Sagotc Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:21 Binary trees Arrays Knowledge representation Data types Theoretical computer science Suffix tree Tree Suffix array Rope Lowest common ancestor AVL tree B-tree
19	Genome Informatics 13: 3–A String Pattern Regression Algorithm and Its Application to Pattern Discovery in Long Introns Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-09 05:53:37 Formal languages Pattern matching String searching algorithm Regular expression Intron String Suffix tree Substring Teiresias algorithm Pattern language